SeqAn3 3.4.0
The Modern C++ library for sequence analysis.
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sam_file/output_options.hpp
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1// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
2// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
3// SPDX-License-Identifier: BSD-3-Clause
4
9
10#pragma once
11
12#include <seqan3/core/platform.hpp>
13
14namespace seqan3
15{
16
22struct sam_file_output_options
23{
27 bool add_carriage_return = false;
28
41 bool sam_require_header = true;
42};
43
44} // namespace seqan3
seqan3
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
platform.hpp
Provides platform and dependency checks.
seqan3::sam_file_output_options
The options type defines various option members that influence the behavior of all or some formats.
Definition sam_file/output_options.hpp:23
seqan3::sam_file_output_options::add_carriage_return
bool add_carriage_return
The default plain text line-ending is "\n", but on Windows an additional carriage return is recommend...
Definition sam_file/output_options.hpp:27
seqan3::sam_file_output_options::sam_require_header
bool sam_require_header
Whether to require a header for SAM files.
Definition sam_file/output_options.hpp:41
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