SeqAn3
3.4.0
The Modern C++ library for sequence analysis.
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Here is a list of all documented class members with links to the class documentation for each member:
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- f -
fasta_blank_before_id :
seqan3::sequence_file_output_options
fasta_ignore_blanks_before_id :
seqan3::sequence_file_input_options< sequence_legal_alphabet >
fasta_legacy_id_marker :
seqan3::sequence_file_output_options
fasta_letters_per_line :
seqan3::sequence_file_output_options
fastq_double_id :
seqan3::sequence_file_output_options
field_ids :
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
,
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
field_types :
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
file_extensions :
seqan3::format_bam
,
seqan3::format_embl
,
seqan3::format_fasta
,
seqan3::format_fastq
,
seqan3::format_genbank
,
seqan3::format_sam
,
seqan3::format_vienna
,
seqan3::sam_file_input_format< t >
,
seqan3::sam_file_output_format< t >
,
seqan3::sequence_file_input_format< t >
,
seqan3::sequence_file_output_format< t >
,
seqan3::structure_file_input_format< t >
,
seqan3::structure_file_output_format< t >
file_open_error() :
seqan3::file_open_error
file_validator_base() :
seqan3::file_validator_base
,
seqan3::input_directory_validator
,
seqan3::input_file_validator< file_t >
,
seqan3::output_directory_validator
,
seqan3::output_file_validator< file_t >
find_index() :
seqan3::printer_order< printer_templates_t >
flag() :
seqan3::sam_record< field_types, field_ids >
flag_type :
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
flags() :
seqan3::debug_stream_type< char_t >
flags2() :
seqan3::debug_stream_type< char_t >
flip() :
seqan3::dynamic_bitset< bit_capacity >
fm_index() :
seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
fm_index_cursor() :
seqan3::fm_index_cursor< index_t >
fmtflags :
seqan3::debug_stream_type< char_t >
format_bam() :
seqan3::format_bam
format_embl() :
seqan3::format_embl
format_error() :
seqan3::format_error
format_fasta() :
seqan3::format_fasta
format_fastq() :
seqan3::format_fastq
format_genbank() :
seqan3::format_genbank
format_sam() :
seqan3::format_sam
format_version :
seqan3::sam_file_header< ref_ids_type >
format_vienna() :
seqan3::format_vienna
free_end_gaps_sequence1_leading :
seqan3::align_cfg::method_global
free_end_gaps_sequence1_trailing :
seqan3::align_cfg::method_global
free_end_gaps_sequence2_leading :
seqan3::align_cfg::method_global
free_end_gaps_sequence2_trailing :
seqan3::align_cfg::method_global
front() :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
,
seqan3::small_vector< value_type_, capacity_ >
,
seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
fwd_cursor() :
seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
,
seqan3::bi_fm_index_cursor< index_t >
fwd_cursor_type :
seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
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